Scaffold Ga0214919_10000079

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10000079
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 148133
• Total Scaffold Genes: 218
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 136 (62.39%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Associated Families: 14

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002267	Metagenome / Metatranscriptome	576	Y
F002869	Metagenome / Metatranscriptome	524	Y
F014734	Metagenome / Metatranscriptome	260	Y
F021295	Metagenome	219	N
F023035	Metagenome	211	Y
F027175	Metagenome / Metatranscriptome	195	N
F046897	Metagenome	150	Y
F047670	Metagenome	149	Y
F050978	Metagenome	144	Y
F051079	Metagenome	144	N
F051887	Metagenome / Metatranscriptome	143	Y
F066722	Metagenome	126	Y
F070997	Metagenome	122	N
F091591	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_10000079104	F066722	N/A	MEQEIMQAWQVLDDIKMLSAREGTEKEDWDAVYRLYQIRFETLFETFEQLIKAGTIL
Ga0214919_10000079109	F002869	GGAG	MSNEITTEMLDRKIAWCEQNAFWGRGSAIQRMQDFYFEKTRDTVNEPWPESFTLDDLAKALNVERVSYRIYYSRDNLTLRLFVFRAHCTESEEQKMLALGFVHAKDGDTENIPNKELVE
Ga0214919_10000079113	F050978	N/A	MHCCLDCAMETVDYVRLNCGSQQALAYKHQLDIDGLIVNQDYTWRYQKPVYDEFAWTDSEVSNVTFTFRNPMLATFYQLKWCR
Ga0214919_10000079117	F051079	N/A	MNLLYNSGIVLQRIEMNDWDRNNLHFILDSDEATLEDFYSWATEDDLAYALSLVREAKTELLLQEADILDEMLIAATEDDVSEASAMLKQFQL
Ga0214919_10000079130	F047670	AGGAG	MKIRNEYLWLVLLVAVIAGGPLLSIWALNTLFPVLAIPYTLETWAAMALVGGVFQSLKIGKKD
Ga0214919_10000079134	F021295	GAG	MLEFEDDPIYEYAKTVMFQIMTVLYMNGRTEAHVGAIMRLLGVDEDHARLHDDERIELDENFARMAAELNMNELVSAQVPQGTTIH
Ga0214919_10000079146	F051887	GGAG	MTYHYYGVKGDFAWKLAVDNKLRSTNINHVPRLMRESDQVWCQGPRGGVQLIKGAYWNYWATYLRRDSEKMKQFTWVKLRARALKQS
Ga0214919_10000079199	F014734	GGAG	MAEESAKGAFIEKLLFALLPLIIAGVGYLLNSVAQLNHQVTILESKVSLVVTQDNKQASNTGSELAREKLRQDLTEAIQKNRDSIQENKQMIAVHEERIRRLEKAGAK
Ga0214919_10000079202	F023035	AGG	MNPVTKTLLLILSTILAVFAVPAVLIVFHVYLNAFFAITLFIACFVLFGYYTFQEIYPEIQRKHLEEEAIFHQFHGDKDKIRYYKGFKKHFDGELDLEQLEQWFERHPRKH
Ga0214919_1000007921	F027175	N/A	MTRDQKLERFAERELKRVYTELIIDDEHGGYVAFGRYHLCPESAGFAVYHSDDLVSMFSSKKTAMSWCVADHLQQYRLAQNIRILDNKKQTLTADIHCRSGQADRSNRPEFREMVRTKLAPKIENLTLLNQELEKCLNSAKYLQLRGFAK
Ga0214919_1000007923	F046897	GAG	MRIDEVENSSSLDPNKLMGLVNFLSGRADDENAQKQISTDAFISAAQSLGFPVNQRNIISVVSTPPLDSVLEPIDPSNPSVIMYKGANTGATQMPVNKAQDIVAASAKSAAGKERGV
Ga0214919_1000007936	F070997	AGGA	MSVEIGKTYTMRMGYGEEIVAKITGFNSSTYTLSKPVAVVPGQQGIQLMNSLFTADPEAEVTVNISSVAMIAPVREDVGDSYLEATTGIKPVRSKILMG
Ga0214919_1000007966	F002267	AGGAG	MSGIMQSAISNWRPAVSSAPTLVYDLDAANYAAVPTTGSTVAGTGAYTITVANAGSRLGWSATNGGIFTFTGSGTSTTDTMYGGPNYVTSQSYSVFMAYQRTNVANGRLLNTQSEASKDWLMGLYNGNPDTFYPNVSVNLPGSGADLIWHFGWATWNTTTSLGQLYTATNTQPSAVAFSTTNAGGGGFNQLRMFSRSAGSEVQTGNIGFIKVYNGVLDLTTVQSLYATYKTRFGY
Ga0214919_1000007994	F091591	AGGAG	MRTKTVFHGLKNSQKVRVIFKGDGSENDIGMYLTVKQITEQFATVNARSLCFDAMYELVQMRFLAETGKQPVPTGLGTTIRGKQIQVDLI